Family GP003415


Family ID GP003415  add to my list RDF
Family name Transcription initiation factor iid, 18 kda subunit family   suggest a name
Synonym(s) Transcription initiation factor TFIID subunit D11
Cross-reference(s) PMID:
Human TAF(II)28 and TAF(II)18 interact through a histone fold encoded by atypical evolutionary conserved motifs also found in the SPT3 family.
9695952
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Transcription initiation factor iid, 18 kda subunit family
GP003415 (69)
2
(plant-specificity: 9%)
GP019923 (69)
3 GP044854 (67)
4 GP074467 (67)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 69
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
6 6
2 2
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
2 2
1 1
1 1
1 1
2 2
1 1
1 1
1 1
5 5
2 2
1 1
1 1
1 1
1 1
1 6
1 1
1 1
2 2
2 2
1 1
3 8
6 6


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Transcription initiation factor IID, 18kDa subunit
IPR003195
Transcription initiation factor IID, 18kDa subunit Family 90 (62) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Histone-fold
IPR009072
Histone-fold Domain 91 (63) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR009072 IPR003195


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
69 58 (84%) 56 (81%) [52; 130; 356] ~131 518 124


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
69 56 (81%) 0.704383 0.572361 0.281148



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