Family GP004936


Family ID GP004936  add to my list RDF
Family name Unannotated cluster   suggest a name
Curation status ?
Found in Theobroma cacao plant-specific
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
(plant-specificity: 100%)
GP004936 (56)
2
(plant-specificity: 100%)
GP023528 (19) ,
(plant-specificity: 100%)
GP023685 (12) ,
(plant-specificity: 100%)
GP026972 (11) ,
(plant-specificity: 100%)
GP027489 (6) ,
(plant-specificity: 100%)
GP032020 (5) , GP032018 (3)
3
(plant-specificity: 100%)
GP056290 (13) ,
(plant-specificity: 100%)
GP049185 (12) ,
(plant-specificity: 100%)
GP056293 (6) ,
(plant-specificity: 100%)
GP054088 (6) , GP068426 (4) , GP056307 (4) , GP059997 (4) , GP059928 (3) , GP059995 (3)
4
(plant-specificity: 100%)
GP079383 (12) ,
(plant-specificity: 100%)
GP092814 (11) ,
(plant-specificity: 100%)
GP088247 (6) ,
(plant-specificity: 100%)
GP085492 (6) , GP092867 (4) , GP103285 (3) , GP092788 (3) , GP088266 (3) , GP092865 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 56
Species Count (w/o splice) Count (w/ splice)
56 56


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
56 56 (100%) 29 (52%) [52; 124; 273] ~126 614 16