Family GP003533


Family ID GP003533  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group
GP003533 (68)
2 GP020163 (68)
3 GP045115 (68)
4 GP074744 (68)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 68
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
2 2
1 1
1 1
1 1
1 1
1 1
1 2
1 1
1 1
1 1
1 5
1 1
1 1
1 1
3 3
1 1
1 1
1 1
4 4
2 8
1 1
1 3
1 1
1 1
1 2
2 2
1 1
1 1
1 1
1 2
3 9
3 3


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
68 47 (69%) 47 (69%) [65; 218; 319] ~212 411 217


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
68 47 (69%) 0.477164 0.458499 0.0805979



for (default: all):
Species



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