Family GP003214


Family ID GP003214  add to my list RDF
Family name BTB/POZ group   suggest a name
Family Ontology
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molecular_function
NADH dehydrogenase (ubiquinone) activity
GO:0008137 (1%) - NADH dehydrogenase (ubiquinone) activity
biological_process
ATP synthesis coupled electron transport
GO:0042773 (1%) - ATP synthesis coupled electron transport
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
BTB/POZ group (plant-specificity: 30%)
GP003214 (69)
2
(plant-specificity: 22%)
GP019556 (67)
3 GP044448 (67)
4 GP074008 (67)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 69
Species Count (w/o splice) Count (w/ splice)
3 3
4 5
4 4
1 1
2 2
2 2
2 2
5 5
1 2
1 1
1 1
1 1
2 3
1 1
1 1
1 1
2 2
1 1
3 3
6 6
1 2
1 1
3 5
2 2
1 1
1 1
3 3
1 1
1 1
1 1
1 1
2 2
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
BTB/POZ-like
IPR000210
BTB/POZ-like Domain 67 (46) No
BTB/POZ fold
IPR011333
BTB/POZ fold Domain 71 (49) No
BTB/POZ
IPR013069
BTB/POZ Domain 70 (48) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011333 IPR000210 IPR013069


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
69 63 (91%) 45 (65%) [33; 814; 1032] ~640 1703 702