Family GP001603


Family ID GP001603  add to my list RDF
Family name Transcription elongation factor Spt5 family   suggest a name
Family Ontology
Close Hide
N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Transcription elongation factor Spt5 family (plant-specificity: 80%)
GP001603 (631)
2 GP015459 (1392) ,
(plant-specificity: 99%)
GP021526 (258) , GP016857 (275) ,
(plant-specificity: 80%)
GP109052 (86) ,
(plant-specificity: 100%)
GP022549 (51) ,
(plant-specificity: 97%)
GP109397 (34) ,
(plant-specificity: 100%)
GP109605 (25) ,
(plant-specificity: 86%)
GP028094 (21) ,
(plant-specificity: 100%)
GP027198 (13) ,
(plant-specificity: 100%)
GP110910 (11) ,
(plant-specificity: 100%)
GP111898 (11) ,
(plant-specificity: 100%)
GP112176 (7) ,
(plant-specificity: 100%)
GP112202 (9) ,
(plant-specificity: 100%)
GP038627 (6) ,
(plant-specificity: 100%)
GP038678 (6) ,
(plant-specificity: 100%)
GP112682 (7) ,
(plant-specificity: 100%)
GP029163 (6) ,
(plant-specificity: 100%)
GP113008 (6) , GP113220 (5) ,
(plant-specificity: 100%)
GP031927 (5) ,
(plant-specificity: 100%)
GP113735 (5) , GP027840 (4) , GP115084 (4) , GP037087 (3) , GP036432 (3) , GP035849 (3) , GP117423 (3) , GP117554 (3) , GP117558 (3) , GP117586 (5) , GP117594 (3) , GP031928 (3)
3 GP040192 (946) ,
(plant-specificity: 100%)
GP047973 (166) ,
(plant-specificity: 100%)
GP067196 (102) , GP042147 (108) ,
(plant-specificity: 80%)
GP118909 (73) ,
(plant-specificity: 99%)
GP047748 (72) ,
Eggshell family (plant-specificity: 100%)
GP049164 (51) ,
(plant-specificity: 100%)
GP119276 (32) ,
(plant-specificity: 94%)
GP119413 (26) ,
(plant-specificity: 100%)
GP119450 (25) ,
(plant-specificity: 98%)
GP120166 (17) ,
(plant-specificity: 90%)
GP120339 (14) ,
(plant-specificity: 100%)
GP064846 (10) ,
(plant-specificity: 100%)
GP121902 (9) ,
(plant-specificity: 100%)
GP123005 (7) ,
(plant-specificity: 100%)
GP123021 (7) ,
(plant-specificity: 100%)
GP123288 (7) ,
(plant-specificity: 100%)
GP068056 (6) ,
(plant-specificity: 100%)
GP068109 (6) ,
(plant-specificity: 100%)
GP056252 (6) , GP124566 (5) ,
(plant-specificity: 100%)
GP124667 (5) ,
(plant-specificity: 100%)
GP059874 (5) ,
(plant-specificity: 100%)
GP124921 (5) , GP125213 (5) ,
(plant-specificity: 100%)
GP125302 (5) , GP054649 (4) , GP127191 (5) , GP127196 (4) , GP127642 (4) , GP127764 (4) , GP066158 (3) , GP065409 (3) , GP129609 (3) , GP064780 (3) , GP130597 (3) , GP130599 (3) , GP130755 (3) , GP130759 (3) , GP130794 (3) , GP130955 (3) , GP059875 (3)
4
(plant-specificity: 97%)
GP080074 (343) , GP078089 (155) , GP072200 (108) ,
(plant-specificity: 100%)
GP101902 (75) ,
(plant-specificity: 80%)
GP132507 (52) ,
(plant-specificity: 100%)
GP080075 (46) ,
(plant-specificity: 97%)
GP132762 (31) ,
(plant-specificity: 100%)
GP132924 (25) ,
(plant-specificity: 94%)
GP132958 (24) ,
(plant-specificity: 100%)
GP133223 (20) ,
(plant-specificity: 98%)
GP133507 (17) ,
(plant-specificity: 100%)
GP133646 (16) ,
(plant-specificity: 100%)
GP133808 (15) ,
(plant-specificity: 98%)
GP094280 (13) ,
(plant-specificity: 88%)
GP135656 (9) ,
(plant-specificity: 100%)
GP135959 (8) ,
(plant-specificity: 100%)
GP137215 (7) ,
(plant-specificity: 100%)
GP137245 (7) ,
(plant-specificity: 100%)
GP137296 (7) ,
(plant-specificity: 100%)
GP099139 (7) ,
(plant-specificity: 100%)
GP137552 (7) ,
(plant-specificity: 100%)
GP102839 (6) ,
(plant-specificity: 100%)
GP102896 (6) ,
(plant-specificity: 100%)
GP088201 (6) , GP139429 (5) ,
(plant-specificity: 82%)
GP139719 (5) ,
(plant-specificity: 100%)
GP092729 (5) ,
(plant-specificity: 100%)
GP139906 (5) , GP140240 (5) , GP140276 (5) ,
(plant-specificity: 100%)
GP140346 (5) ,
(plant-specificity: 100%)
GP140347 (5) , GP141755 (4) , GP086369 (4) , GP142959 (4) , GP143485 (4) , GP143651 (4) , GP100641 (3) , GP099777 (3) , GP146503 (3) , GP099072 (3) , GP147398 (3) , GP147694 (3) , GP147696 (3) , GP147878 (3) , GP147882 (3) , GP147922 (3) , GP148147 (3) , GP148558 (3) , GP092730 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 631
Species Count (w/o splice) Count (w/ splice)
1 1
76 76
6 6
4 4
4 4
1 1
10 10
4 4
5 5
7 7
17 17
45 48
17 20
5 5
26 26
29 32
28 28
6 6
19 19
16 16
10 10
18 22
12 12
14 14
22 37
13 13
39 53
11 11
4 4
9 9
35 35
7 7
21 21
9 9
16 18
14 15
6 6


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Mitochondrial distribution and morphology family 33, fungi
IPR008839
Mitochondrial distribution and morphology family 33, fungi Family 1 (1) Yes
Transcription elongation factor Spt5
IPR017071
Transcription elongation factor Spt5 Family 8 (51) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
631 585 (93%) 442 (70%) [33; 260; 3733] ~529 13050 24