Family GP000367


Family ID GP000367  add to my list RDF
Family name Xklp2 targeting family   suggest a name
Cross-reference(s) PMID:
Xklp2, a novel Xenopus centrosomal kinesin-like protein required for centrosome separation during mitosis.
8548825
Comment
Curation status ?
Found in Plant-specific plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Xklp2 targeting family (plant-specificity: 100%)
GP000367 (653)
2 GP015595 (434) ,
(plant-specificity: 99%)
GP021526 (258) , GP017189 (155) ,
(plant-specificity: 96%)
GP021525 (49) , GP112591 (6) , GP115745 (3) , GP116798 (3)
3 GP040950 (385) ,
(plant-specificity: 100%)
GP067196 (102) ,
(plant-specificity: 100%)
GP045183 (77) ,
(plant-specificity: 96%)
GP046829 (43) ,
(plant-specificity: 100%)
GP045402 (60) ,
(plant-specificity: 100%)
GP047959 (40) ,
(plant-specificity: 100%)
GP051848 (9) ,
(plant-specificity: 97%)
GP122123 (9) , GP122770 (9) , GP123639 (6) ,
(plant-specificity: 100%)
GP124746 (6) , GP128088 (3) , GP129828 (3)
4 GP070751 (183) , GP071959 (107) ,
(plant-specificity: 100%)
GP101902 (75) ,
(plant-specificity: 100%)
GP076942 (68) ,
(plant-specificity: 100%)
GP076715 (60) ,
(plant-specificity: 100%)
GP077816 (47) ,
(plant-specificity: 100%)
GP081907 (45) ,
(plant-specificity: 100%)
GP078659 (40) , GP078007 (33) ,
(plant-specificity: 100%)
GP082712 (9) ,
(plant-specificity: 97%)
GP135381 (9) , GP135493 (9) ,
(plant-specificity: 100%)
GP138026 (6) , GP138102 (6) ,
(plant-specificity: 100%)
GP139066 (5) ,
(plant-specificity: 100%)
GP080148 (5) , GP143941 (3) , GP144099 (3) , GP144391 (3) , GP145143 (3) , GP084207 (3) , GP146802 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 653
Species Count (w/o splice) Count (w/ splice)
2 2
1 1
16 24
4 4
15 15
5 5
19 19
10 10
9 9
13 13
11 16
8 12
10 10
11 11
18 44
13 14
12 12
13 13
14 14
10 10
15 31
8 8
37 37
18 67
8 8
19 46
8 8
21 21
9 23
17 17
9 9
16 18
10 10
13 18
29 61
13 13


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
TPX2
IPR009675
TPX2 Family 68 (443) No
Kinetochore protein
IPR013253
Kinetochore protein Family 1 (1) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR009675


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
653 464 (71%) 406 (62%) [42; 440; 2763] ~436 4472 186




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