Family GP003573


Family ID GP003573  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group (plant-specificity: 96%)
GP003573 (69)
2
(plant-specificity: 96%)
GP020625 (63) ,
(plant-specificity: 95%)
GP031587 (6)
3
(plant-specificity: 96%)
GP045632 (63) ,
(plant-specificity: 95%)
GP059483 (6)
4 GP075284 (63) ,
(plant-specificity: 95%)
GP092295 (6)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 69
Species Count (w/o splice) Count (w/ splice)
1 1
6 6
3 3
7 7
2 2
4 4
5 5
3 3
2 2
1 1
1 1
2 2
2 2
4 4
3 3
3 3
2 2
1 1
2 2
1 1
1 1
3 3
2 2
1 1
1 1
3 3
1 1
2 2


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Glycosyltransferase AER61, uncharacterised
IPR007657
Glycosyltransferase AER61, uncharacterised Family 87 (60) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR007657


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Species
Information to display
?


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
69 69 (100%) 62 (90%) [52; 474; 1468] ~458 2199 326




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Species



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