Family GP000094


Family ID GP000094  add to my list RDF
Family name Probable WRKY transcription factor superfamily   suggest a name
Family Ontology
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N/A
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Probable WRKY transcription factor superfamily (plant-specificity: 99%)
GP000094 (3517)
2
WRKY transcription factor family
GP015175 (3446) ,
(plant-specificity: 100%)
GP110693 (7) ,
(plant-specificity: 96%)
GP110868 (12) ,
(plant-specificity: 100%)
GP111078 (10) ,
(plant-specificity: 100%)
GP111708 (7) , GP030965 (4) ,
(plant-specificity: 100%)
GP028353 (5) , GP113298 (4) ,
(plant-specificity: 100%)
GP114395 (5) , GP114421 (4) , GP116383 (3)
3 GP039893 (1576) , GP040200 (612) , GP040237 (372) , GP040089 (440) , GP040289 (377) ,
(plant-specificity: 100%)
GP119877 (21) ,
(plant-specificity: 96%)
GP120795 (12) ,
(plant-specificity: 100%)
GP048656 (13) ,
(plant-specificity: 100%)
GP121119 (17) ,
(plant-specificity: 100%)
GP122776 (7) ,
(plant-specificity: 100%)
GP122999 (7) ,
(plant-specificity: 100%)
GP123443 (9) ,
(plant-specificity: 100%)
GP123705 (7) ,
(plant-specificity: 100%)
GP124664 (5) ,
(plant-specificity: 100%)
GP053550 (5) ,
(plant-specificity: 100%)
GP055313 (5) , GP126277 (4) , GP126307 (4) , GP126399 (3) , GP058651 (4) , GP131344 (3)
4 GP069482 (1515) , GP069666 (444) , GP069663 (399) , GP069746 (374) , GP070261 (192) , GP070690 (180) , GP070435 (163) ,
(plant-specificity: 86%)
GP132738 (32) ,
(plant-specificity: 100%)
GP081839 (17) ,
(plant-specificity: 100%)
GP133767 (15) ,
(plant-specificity: 100%)
GP080260 (13) ,
(plant-specificity: 100%)
GP081999 (13) ,
(plant-specificity: 96%)
GP134400 (12) ,
(plant-specificity: 94%)
GP134633 (11) ,
(plant-specificity: 100%)
GP080748 (10) ,
(plant-specificity: 100%)
GP135436 (9) ,
(plant-specificity: 98%)
GP136042 (8) ,
(plant-specificity: 100%)
GP136914 (7) ,
(plant-specificity: 100%)
GP082882 (7) ,
(plant-specificity: 100%)
GP137201 (7) ,
(plant-specificity: 100%)
GP081926 (6) , GP082987 (6) ,
(plant-specificity: 92%)
GP139316 (5) ,
(plant-specificity: 100%)
GP084907 (5) ,
(plant-specificity: 100%)
GP087161 (5) , GP141773 (4) , GP141834 (4) , GP142191 (4) , GP091392 (4) , GP144289 (3) , GP090950 (3) , GP144761 (3) , GP144874 (3) , GP095021 (3) , GP145425 (3) , GP145820 (3) , GP145874 (3) , GP147583 (3) , GP148597 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 3517
Species Count (w/o splice) Count (w/ splice)
2 2
4 4
42 49
19 19
104 104
34 34
154 154
147 147
110 110
89 89
100 126
85 90
74 74
106 106
129 182
94 95
47 47
89 89
84 84
60 60
71 86
52 52
94 94
118 218
59 59
104 190
62 62
118 118
65 88
166 166
88 88
118 127
68 68
90 102
183 235
99 99


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
DASH complex subunit Dad4
IPR013959
DASH complex subunit Dad4 Family 1 (1) Yes
Transcription factor, WRKY group IIc
IPR017396
Transcription factor, WRKY group IIc Family 1 (15) Yes
Transcription factor, WRKY group Iie
IPR017412
Transcription factor, WRKY group Iie Family 1 (2) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
DNA-binding WRKY
IPR003657
DNA-binding WRKY Domain 90 (3172) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR003657


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Species
Information to display
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