Family GP003649


Family ID GP003649  add to my list RDF
Family name Ribonuclease III group   suggest a name
Comment
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Ribonuclease III group (plant-specificity: 11%)
GP003649 (67)
2
(plant-specificity: 11%)
GP020405 (67)
3
(plant-specificity: 11%)
GP045392 (61) ,
(plant-specificity: 33%)
GP123491 (6)
4 GP075023 (61) ,
(plant-specificity: 33%)
GP137872 (6)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 67
Species Count (w/o splice) Count (w/ splice)
2 2
6 6
1 1
1 1
1 1
1 1
1 1
1 1
2 4
1 1
1 1
1 1
1 5
1 2
1 1
1 1
1 1
1 1
2 4
1 1
2 2
1 2
1 1
2 11
1 1
2 2
2 2
1 1
1 1
2 2
1 1
1 1
1 2
1 1


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Mini-ribonuclease 3 like
IPR008226
Mini-ribonuclease 3 like Family 3 (2) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Ribonuclease III domain
IPR000999
Ribonuclease III domain Domain 78 (52) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000999


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Species
Information to display
?


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
67 47 (70%) 45 (67%) [73; 235; 883] ~214 1258 177


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
67 45 (67%) 1.42355 1.30432 0.26657



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