Family GP000429


Family ID GP000429  add to my list RDF
Family name Starch synthase family   suggest a name
Cross-reference(s) PMID:
The map-based sequence of the rice genome.
16100779 PMID:
Nucleotide sequence of a long cDNA from the rice waxy gene.
1377969 PMID:
Nucleotide sequence of rice waxy gene.
2216792 PMID:
Use of alternate splice sites in granule-bound starch synthase mRNA from low-amylose rice varieties.
9747848 PMID:
Variation in the primary structure of waxy proteins (granule-bound starch synthase) in diploid cereals.
8595054 PMID:
Rapid isolation of a rice waxy sequence: a simple PCR method for the analysis of recombinant plasmids from intact Escherichia coli cells.
2016064 PMID:
Identification, cDNA cloning, and gene expression of soluble starch synthase in rice (Oryza sativa L.) immature seeds.
7518089 PMID:
Structure, organization and chromosomal location of the gene encoding a form of rice soluble starch synthase.
7610165 PMID:
Molecular cloning and expression analysis of three genes encoding starch synthase II in rice.
14740212 PMID:
Essential amino acids of starch synthase IIa differentiate amylopectin structure and starch quality between japonica and indica rice varieties.
16027975 PMID:
Granule-bound starch synthase: structure, function, and phylogenetic utility.
9866201 PMID:
Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.
17210932 PMID:
Granule-bound starch synthase I. A major enzyme involved in the biogenesis of B-crystallites in starch granules.
12153578 PMID:
Circadian clock regulation of starch metabolism establishes GBSSI as a major contributor to amylopectin synthesis in Chlamydomonas reinhardtii.
16844835 PMID:
Testicular atrophy in rats following epinephrine administration.
5272305
Family Ontology
Close Hide
molecular_function
starch synthase activity
GO:0009011 (59%) - starch synthase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Starch synthase family (plant-specificity: 19%)
GP000429 (639)
2 GP015872 (633) , GP033432 (3) , GP116829 (3)
3 GP040521 (332) , GP040647 (301) , GP061976 (3)
4 GP070950 (330) , GP070650 (301) , GP095805 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 639
Species Count (w/o splice) Count (w/ splice)
1 1
14 14
78 78
16 16
7 7
19 19
7 7
17 17
14 14
7 7
13 13
12 26
10 12
10 10
12 12
13 26
10 11
8 8
10 10
18 18
12 12
6 9
9 9
31 31
15 46
10 10
8 40
10 10
15 15
6 12
27 27
26 26
13 13
8 8
10 12
19 24
9 9


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Glycogen/starch synthase, ADP-glucose type
IPR011835
Glycogen/starch synthase, ADP-glucose type Family 59 (378) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Glycosyl transferase, family 1
IPR001296
Glycosyl transferase, family 1 Domain 64 (409) No
Starch synthase, catalytic domain
IPR013534
Starch synthase, catalytic domain Domain 82 (523) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR013534 IPR001296 IPR011835


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
639 527 (82%) 409 (64%) [38; 610; 1917] ~631 4507 279