Family GP003808


Family ID GP003808  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Curation status ?
Found in Viridiplantae plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group (plant-specificity: 100%)
GP003808 (63)
2
(plant-specificity: 100%)
GP020686 (60) , GP116452 (3)
3
(plant-specificity: 100%)
GP045698 (60) , GP129293 (3)
4 GP075348 (60) , GP146042 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 63
Species Count (w/o splice) Count (w/ splice)
1 1
1 2
1 1
2 2
1 1
2 2
2 2
1 1
1 1
2 2
3 3
2 2
2 2
2 3
2 2
1 1
1 1
1 1
1 1
1 1
1 1
4 4
1 2
1 1
2 6
1 1
1 1
1 4
4 4
1 1
1 1
1 1
1 1
2 2
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
63 53 (84%) 52 (83%) [79; 159; 305] ~165 631 145


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
63 52 (83%) 0.867003 0.672829 0.355667



for (default: all):
Species



(click on the button above to get your homolog prediction list)