Family GP039861


Family ID GP039861  add to my list RDF
Family name Unannotated cluster   suggest a name
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
(plant-specificity: 100%)
GP000116 (1347)
2
AUX/IAA transcription factor family
GP015122 (1299)
3 GP039861 (1287)
4 GP069392 (1273) , GP141680 (4) , GP144064 (3) , GP144861 (3) , GP145050 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 1287
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
4 4
22 22
15 15
47 47
43 43
24 24
20 20
31 57
26 40
25 25
27 27
37 79
26 30
16 16
24 24
24 24
24 24
28 39
21 21
47 47
43 142
21 21
33 84
19 19
47 47
28 61
45 45
25 25
29 31
22 22
28 32
62 98
29 29


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
AUX/IAA protein
IPR003311
AUX/IAA protein Family 94 (1204) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Aux/IAA-ARF-dimerisation
IPR011525
Aux/IAA-ARF-dimerisation Domain 93 (1192) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011525 IPR003311


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Species
Information to display
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(click on the button above to get your protein list)