Family GP000215


Family ID GP000215  add to my list RDF
Family name PLATZ transcription factor family   suggest a name
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
PLATZ transcription factor family (plant-specificity: 73%)
GP000215 (632)
2 GP015283 (632)
3 GP039955 (632)
4 GP069727 (632)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 632
Species Count (w/o splice) Count (w/ splice)
1 1
4 4
2 2
14 18
17 17
16 16
7 7
27 27
26 26
19 19
18 18
16 22
15 15
8 8
19 19
15 17
15 17
7 7
13 13
21 21
13 13
13 16
11 11
22 22
28 44
14 14
21 38
11 11
23 23
12 15
10 10
13 13
23 24
10 10
14 15
32 46
13 13


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Protein of unknown function DUF597
IPR006734
Protein of unknown function DUF597 Family 90 (567) No
Life-span regulatory factor
IPR024368
Life-span regulatory factor Family 1 (5) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR006734


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
632 563 (89%) 529 (84%) [46; 227; 3285] ~230 4503 130




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