Family GP039978


Family ID GP039978  add to my list RDF
Family name CCAAT-HAP3 transcription factor family   suggest a name
Comment DAFT and DRTF description
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
(plant-specificity: 19%)
GP104214 (768)
2 GP015318 (765)
3
CCAAT-HAP3 transcription factor family
GP039978 (617)
4 GP069488 (617)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 617
Species Count (w/o splice) Count (w/ splice)
1 1
5 5
12 12
6 13
5 5
15 15
7 7
18 18
15 15
19 19
15 15
11 18
15 16
9 9
14 14
16 22
12 13
12 12
21 21
27 27
14 14
10 20
10 10
20 20
21 32
12 12
19 31
12 12
17 17
13 16
33 33
11 11
20 20
15 15
17 18
33 39
20 20


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Transcription factor, CBFA/NFYB, DNA topoisomerase
IPR003957
Transcription factor, CBFA/NFYB, DNA topoisomerase Family 88 (545) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Transcription factor CBF/NF-Y/archaeal histone
IPR003958
Transcription factor CBF/NF-Y/archaeal histone Domain 93 (574) No
Histone-fold
IPR009072
Histone-fold Domain 95 (585) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR009072 IPR003958 IPR003957
Transcription factor, NFYB/HAP3, conserved site
IPR003956



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Species
Information to display
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(click on the button above to get your protein list)