Family GP002924


Family ID GP002924  add to my list RDF
Family name DNA binding protein S1FA family   suggest a name
Synonym(s) S1FA-like transcription factor family
Cross-reference(s) PMID:
Molecular cloning of a small DNA binding protein with specificity for a tissue-specific negative element within the rps1 promoter.
7739894
Curation status ?
Found in Viridiplantae plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
DNA binding protein S1FA family (plant-specificity: 100%)
GP002924 (61)
2
(plant-specificity: 100%)
GP019198 (61)
3
(plant-specificity: 100%)
GP044028 (61)
4 GP076380 (61)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 61
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
2 2
1 1
3 3
2 2
1 2
1 1
1 1
2 5
1 2
1 1
3 3
1 1
2 2
3 3
1 1
1 1
3 4
1 1
2 2
1 1
1 1
2 3
3 3
2 2
1 1
2 2
2 2
4 4
1 1


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
DNA binding protein S1FA
IPR006779
DNA binding protein S1FA Family 97 (59) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR006779


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
61 54 (89%) 54 (89%) [56; 82; 155] ~83 252 82


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
61 54 (89%) 1.20386 1.20979 0.172641



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