Family GP000426


Family ID GP000426  add to my list RDF
Family name Sulphate transporter superfamily   suggest a name
Cross-reference(s) PMID:
Similarities between a soybean nodulin, Neurospora crassa sulphate permease II and a putative human tumour suppressor.
8140616
Family Ontology
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molecular_function
secondary active sulfate transmembrane transporter activity
GO:0008271 (63%) - secondary active sulfate transmembrane transporter activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Sulphate transporter superfamily
GP000426 (630)
2
Sulphate anion transporter family
GP015345 (622) , GP026484 (10) , GP036120 (4)
3 GP040015 (622) , GP051198 (10) , GP065084 (4)
4 GP069516 (622) , GP081891 (10) , GP099414 (4) , GP144968 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 630
Species Count (w/o splice) Count (w/ splice)
2 2
4 4
5 11
4 4
25 25
7 7
23 23
20 20
23 23
12 12
16 28
10 14
10 10
10 10
9 17
11 11
9 9
16 16
16 16
15 15
12 14
10 10
19 19
20 45
10 10
20 43
14 14
16 16
10 14
18 18
20 20
27 27
18 18
15 16
41 50
19 19


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Sulphate anion transporter
IPR001902
Sulphate anion transporter Family 70 (440) Yes
Protein of unknown function DUF1275
IPR010699
Protein of unknown function DUF1275 Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
STAS domain
IPR002645
STAS domain Domain 81 (513) No
Sulphate transporter
IPR011547
Sulphate transporter Domain 89 (560) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011547
Sulphate anion transporter, conserved site
IPR018045 IPR001902 IPR002645



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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
630 536 (85%) 438 (70%) [43; 650; 1625] ~566 5100 547