Family GP000673


Family ID GP000673  add to my list RDF
Family name 11-S Plant Seed Storage Family   suggest a name
Synonym(s) Cupin globulin
Cross-reference(s) PMID:
Structure and expression of the rice glutelin multigene family.
2745459 PMID:
Low glutelin content1: a dominant mutation that suppresses the glutelin multigene family via RNA silencing in rice.
12782736 PMID:
Storage protein accumulation in the absence of the vacuolar processing enzyme family of cysteine proteases.
14688293 PMID:
Redundant proteolytic mechanisms process seed storage proteins in the absence of seed-type members of the vacuolar processing enzyme family of cysteine proteases.
12417707 PMID:
Characterization of the glycinin gene family in soybean.
2485233
Curation status ?
Found in Plant-specific plant-specific
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
11-S Plant Seed Storage Family (plant-specificity: 100%)
GP000673 (630)
2
Cupin subfamily 1: Glutelin,cruciferin.
GP016309 (188) , GP016520 (177) ,
Cupin subfamily 4
GP017361 (132) ,
Cupin subfamily 3: Beta-conglycinin
GP017173 (131)
3 GP040920 (186) , GP041156 (177) , GP041828 (131) , GP042025 (132)
4 GP070323 (182) , GP070568 (177) , GP072903 (104) , GP072264 (93) ,
(plant-specificity: 100%)
GP077884 (38) ,
(plant-specificity: 100%)
GP132815 (28) , GP141904 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 630
Species Count (w/o splice) Count (w/ splice)
2 2
15 15
35 35
9 9
20 20
25 25
20 20
8 8
26 33
16 17
11 11
9 9
11 14
7 7
10 10
23 23
24 24
17 17
10 15
11 11
7 7
12 20
8 8
20 37
24 24
20 20
15 15
32 32
18 18
37 41
16 16
13 15
30 35
17 17


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Cupin 1
IPR006045
Cupin 1 Domain 90 (569) No
RmlC-like cupin domain
IPR011051
RmlC-like cupin domain Domain 93 (588) No
RmlC-like jelly roll fold
IPR014710
RmlC-like jelly roll fold Domain 94 (592) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR006045 IPR011051 IPR014710


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
630 578 (92%) 462 (73%) [51; 405; 958] ~389 3407 157