Family GP040089


Family ID GP040089  add to my list RDF
Family name Unannotated cluster   suggest a name
Family Ontology
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N/A
Curation status ?
Found in Tracheophyta
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Probable WRKY transcription factor superfamily (plant-specificity: 99%)
GP000094 (3517)
2
WRKY transcription factor family
GP015175 (3446)
3 GP040089 (440)
4 GP069663 (399) ,
(plant-specificity: 100%)
GP080260 (13) ,
(plant-specificity: 100%)
GP080748 (10) ,
(plant-specificity: 98%)
GP136042 (8) , GP082987 (6)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 440
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
4 4
14 14
20 20
11 11
11 11
19 23
19 20
20 20
21 21
27 35
19 19
5 5
14 14
11 11
6 6
10 13
7 7
8 8
12 18
6 6
11 11
8 8
14 14
7 8
17 17
9 9
19 20
8 8
14 14
24 26
15 15


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
DNA-binding WRKY
IPR003657
DNA-binding WRKY Domain 94 (413) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR003657


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Species
Information to display
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(click on the button above to get your protein list)