Family GP040404


Family ID GP040404  add to my list RDF
Family name Unannotated cluster   suggest a name
Family Ontology
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N/A
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Lactate/malate dehydrogenase family (plant-specificity: 9%)
GP000624 (685)
2
Malate Dehydrogenase, NAD-Dependent, Eukaryote/Gamma Proteobacteria Subfamily
GP015749 (345)
3 GP040404 (345)
4 GP069857 (345)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 345
Species Count (w/o splice) Count (w/ splice)
3 3
29 29
8 8
4 4
16 16
4 4
8 8
8 8
15 15
11 11
7 11
6 7
6 6
7 7
7 11
6 9
7 7
7 7
6 6
6 6
6 10
4 4
24 24
8 16
5 5
12 25
5 5
9 9
5 7
18 18
6 6
6 6
5 5
3 4
12 14
4 4


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Malate dehydrogenase, type 1
IPR010097
Malate dehydrogenase, type 1 Family 76 (263) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Lactate/malate dehydrogenase, N-terminal
IPR001236
Lactate/malate dehydrogenase, N-terminal Domain 89 (308) No
Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
IPR015955
Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal Domain 87 (301) No
NAD(P)-binding domain
IPR016040
NAD(P)-binding domain Domain 90 (311) No
Lactate/malate dehydrogenase, C-terminal
IPR022383
Lactate/malate dehydrogenase, C-terminal Domain 86 (296) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR016040 IPR015955
L-lactate/malate dehydrogenase
IPR001557
Malate dehydrogenase, active site
IPR001252 IPR001236 IPR022383 IPR010097



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Species
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