Family GP040511


Family ID GP040511  add to my list RDF
Family name Unannotated cluster   suggest a name
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Signal transduction superfamily (plant-specificity: 60%)
GP000129 (2217)
2
Pseudo-response regulator family
GP015864 (422)
3 GP040511 (332)
4 GP070715 (212) , GP072526 (120)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 332
Species Count (w/o splice) Count (w/ splice)
3 3
8 8
4 7
4 4
1 1
4 4
8 8
9 9
8 8
7 7
4 17
4 4
4 4
4 4
7 14
3 3
3 3
2 2
6 6
6 6
5 8
4 4
22 22
9 21
5 5
6 46
8 8
11 11
2 4
12 12
6 6
9 9
5 5
6 9
10 33
7 7


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Signal transduction response regulator, receiver domain
IPR001789
Signal transduction response regulator, receiver domain Domain 81 (270) No
CheY-like superfamily
IPR011006
CheY-like superfamily Domain 83 (277) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011006 IPR001789
CCT domain
IPR010402



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Species
Information to display
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