Family GP004183


Family ID GP004183  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Curation status ?
Found in Tracheophyta plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group (plant-specificity: 100%)
GP004183 (62)
2
(plant-specificity: 100%)
GP023132 (59) , GP117255 (3)
3
(plant-specificity: 100%)
GP048641 (47) ,
(plant-specificity: 100%)
GP049045 (12) , GP130392 (3)
4
(plant-specificity: 100%)
GP078726 (39) ,
(plant-specificity: 100%)
GP080192 (12) ,
(plant-specificity: 100%)
GP088955 (8) , GP147436 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 62
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
2 2
2 2
1 1
2 2
2 2
1 2
1 1
1 1
1 1
2 6
1 1
1 1
1 1
1 1
1 1
1 2
1 1
4 4
1 2
1 1
2 7
1 1
2 2
1 1
2 2
1 1
1 1
2 2
2 4
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



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Species
Information to display
?


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
62 48 (77%) 42 (68%) [53; 629; 896] ~554 1245 349




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