Family GP000042


Family ID GP000042  add to my list RDF
Family name DNA-binding protein phosphatase family   suggest a name
Synonym(s) DBP transcription factor
Cross-reference(s) PMID:
A novel DNA-binding motif, hallmark of a new family of plant transcription factors.
15710688
Comment
Family Ontology
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molecular_function
protein serine/threonine phosphatase activity
GO:0004722 (45%) - protein serine/threonine phosphatase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
DNA-binding protein phosphatase family
GP000042 (3403)
2 GP015188 (1982) , GP015424 (687) , GP015825 (277) , GP015828 (268) , GP018266 (84) , GP019604 (67) ,
(plant-specificity: 22%)
GP110082 (18) ,
(plant-specificity: 83%)
GP112679 (6) , GP114384 (4)
3 GP039888 (1115) , GP040083 (529) , GP040068 (519) , GP040315 (348) , GP040471 (277) , GP040465 (268) , GP041517 (158) , GP043232 (81) , GP044493 (67) ,
(plant-specificity: 22%)
GP055448 (18) ,
(plant-specificity: 83%)
GP123784 (6) , GP126224 (4) , GP058695 (3)
4 GP069532 (916) , GP069575 (524) , GP069562 (519) , GP069769 (348) , GP069919 (275) , GP069952 (268) , GP070962 (158) , GP072736 (81) , GP074053 (67) , GP075096 (65) ,
(plant-specificity: 19%)
GP132425 (63) , GP074065 (63) ,
(plant-specificity: 22%)
GP082958 (18) ,
(plant-specificity: 83%)
GP138290 (6) ,
(plant-specificity: 19%)
GP139031 (5) , GP141695 (4) , GP091448 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 3403
Species Count (w/o splice) Count (w/ splice)
4 4
32 32
70 70
44 64
56 56
156 156
37 37
99 99
83 83
94 94
68 68
73 106
63 81
60 60
75 75
100 190
68 74
46 46
58 58
77 77
57 57
62 92
48 48
151 151
98 269
59 59
91 236
49 49
106 106
48 86
126 126
76 76
81 94
56 56
60 84
130 217
67 67


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
cAMP-dependent protein kinase regulatory subunit
IPR012198
cAMP-dependent protein kinase regulatory subunit Family 1 (1) Yes
Kinase associated protein phosphatase
IPR016660
Kinase associated protein phosphatase Family 1 (7) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Protein phosphatase 2C (PP2C)-like domain
IPR001932
Protein phosphatase 2C (PP2C)-like domain Domain 91 (3111) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001932


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Species
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