Family GP000936


Family ID GP000936  add to my list RDF
Family name Glycoside hydrolase family 13   suggest a name
Cross-reference(s) PMID:
Structures and mechanisms of glycosyl hydrolases.
8535779
Family Ontology
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molecular_function
1,4-alpha-glucan branching enzyme activity
GO:0003844 (22%) - 1,4-alpha-glucan branching enzyme activity
cation binding
GO:0043169 (45%) - cation binding
pullulanase activity
GO:0051060 (8%) - pullulanase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Glycoside hydrolase family 13
GP000936 (617)
2
1,4-alpha-glucan-branching enzyme subfamily
GP016054 (331) ,
Glycogen debranching enzyme GlgX subfamily
GP016534 (196) , GP020541 (78) , GP029057 (7) , GP039146 (3)
3 GP040685 (331) , GP041152 (196) , GP045548 (78) , GP056138 (7) , GP068664 (3)
4 GP070119 (331) , GP070565 (193) , GP075415 (78) , GP088080 (7) , GP144369 (3) , GP103553 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 617
Species Count (w/o splice) Count (w/ splice)
5 5
8 8
56 56
9 12
8 8
28 28
7 7
14 14
17 17
13 13
15 15
9 21
8 14
7 7
9 9
15 23
9 11
12 12
7 7
9 9
7 7
7 10
9 9
20 20
27 91
8 8
12 35
14 14
20 20
9 13
19 19
17 17
12 12
7 7
9 9
16 21
9 9


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
1,4-alpha-glucan-branching enzyme
IPR006407
1,4-alpha-glucan-branching enzyme Family 22 (137) Yes
Glycogen debranching enzyme
IPR011837
Glycogen debranching enzyme Family 1 (3) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Glycoside hydrolase, family 13, N-terminal
IPR004193
Glycoside hydrolase, family 13, N-terminal Domain 60 (370) No
Glycosyl hydrolase, family 13, catalytic domain
IPR006047
Glycosyl hydrolase, family 13, catalytic domain Domain 63 (391) No
Glycosyl hydrolase, family 13, all-beta
IPR013780
Glycosyl hydrolase, family 13, all-beta Domain 52 (320) No
Glycoside hydrolase, catalytic domain
IPR013781
Glycoside hydrolase, catalytic domain Domain 79 (488) No
Immunoglobulin-like fold
IPR013783
Immunoglobulin-like fold Domain 63 (387) No
Immunoglobulin E-set
IPR014756
Immunoglobulin E-set Domain 61 (377) No
Glycoside hydrolase, superfamily
IPR017853
Glycoside hydrolase, superfamily Domain 80 (493) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR014756 IPR013783 IPR013781 IPR017853 IPR006047 IPR004193 IPR013780


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
617 487 (79%) 324 (53%) [34; 718; 1788] ~591 4403 215