Family GP004116


Family ID GP004116  add to my list RDF
Family name Phox-like domain containing protein group   suggest a name
Cross-reference(s) PMID:
Novel domains in NADPH oxidase subunits, sorting nexins, and PtdIns 3-kinases: binding partners of SH3 domains?
8931154
Family Ontology
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molecular_function
phosphatidylinositol binding
GO:0035091 (84%) - phosphatidylinositol binding
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Phox-like domain containing protein group (plant-specificity: 40%)
GP004116 (61)
2
(plant-specificity: 40%)
GP021200 (59)
3
(plant-specificity: 40%)
GP046265 (58)
4
(plant-specificity: 40%)
GP075957 (58)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 61
Species Count (w/o splice) Count (w/ splice)
2 2
1 1
1 1
4 4
1 1
2 2
3 3
2 2
2 2
1 1
1 2
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
2 2
2 2
1 8
1 1
2 5
1 1
1 1
1 1
4 4
1 1
1 1
1 1
1 1
2 2
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Phox homologous domain
IPR001683
Phox homologous domain Domain 84 (51) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001683
Domain of unknown function DUF4206
IPR025258



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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
61 50 (82%) 41 (67%) [131; 940; 1331] ~822 1810 605