Family GP000418


Family ID GP000418  add to my list RDF
Family name Trna synthetase superfamily   suggest a name
Family Ontology
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molecular_function
asparagine-tRNA ligase activity
GO:0004816 (23%) - asparagine-tRNA ligase activity
biological_process
asparaginyl-tRNA aminoacylation
GO:0006421 (23%) - asparaginyl-tRNA aminoacylation
lysyl-tRNA aminoacylation
GO:0006430 (22%) - lysyl-tRNA aminoacylation
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Trna synthetase superfamily
GP000418 (618)
2
Asparaginyl-trna synthetase family
GP016379 (225) ,
Lysyl-trna synthetase family
GP016721 (192) ,
Aspartyl-trna synthetase family
GP017797 (105) , GP018888 (93) , GP116291 (3)
3 GP041006 (225) , GP041353 (192) , GP042476 (105) , GP043671 (93) , GP129050 (3)
4 GP070407 (225) , GP071754 (192) , GP071920 (105) , GP073295 (93) , GP145679 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 618
Species Count (w/o splice) Count (w/ splice)
6 6
5 5
63 63
12 17
10 10
31 31
15 15
13 13
10 10
14 14
12 12
8 15
9 11
12 12
14 14
15 25
9 11
13 13
7 7
12 12
16 16
12 13
9 9
20 20
12 29
11 11
13 37
13 13
14 14
7 11
34 34
13 13
26 27
11 11
10 10
18 22
12 12


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Aspartyl/Asparaginyl-tRNA synthetase, class IIb
IPR002312
Aspartyl/Asparaginyl-tRNA synthetase, class IIb Family 43 (268) Yes
Lysine-2,3-aminomutase family
IPR003739
Lysine-2,3-aminomutase family Family 1 (1) Yes
Asparagine-tRNA ligase, class IIb
IPR004522
Asparagine-tRNA ligase, class IIb Family 23 (140) Yes
Aspartyl-tRNA synthetases
IPR004523
Aspartyl-tRNA synthetases Family 9 (54) Yes
Aspartate-tRNA ligase, class IIb, bacterial/mitochondrial-type
IPR004524
Aspartate-tRNA ligase, class IIb, bacterial/mitochondrial-type Family 10 (59) Yes
Elongation factor P--(R)-beta-lysine ligase
IPR004525
Elongation factor P--(R)-beta-lysine ligase Family 1 (1) Yes
Lysine-2,3-aminomutase-related
IPR022447
Lysine-2,3-aminomutase-related Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Aminoacyl-tRNA synthetase, class II (D/K/N)
IPR004364
Aminoacyl-tRNA synthetase, class II (D/K/N) Domain 82 (507) No
OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR004365
OB-fold nucleic acid binding domain, AA-tRNA synthetase-type Domain 54 (333) No
Aminoacyl-tRNA synthetase, class II
IPR006195
Aminoacyl-tRNA synthetase, class II Domain 64 (394) No
Nucleic acid-binding, OB-fold
IPR012340
Nucleic acid-binding, OB-fold Domain 62 (385) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR012340 IPR004365 IPR006195 IPR004364 IPR002312


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
618 541 (88%) 329 (53%) [30; 543; 1137] ~457 2996 99