Family GP003241


Family ID GP003241  add to my list RDF
Family name Dcp2, box a and NUDIX domain containing family   suggest a name
Family Ontology
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molecular_function
protein binding
GO:0005515 (2%) - protein binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Dcp2, box a and NUDIX domain containing family (plant-specificity: 22%)
GP003241 (61)
2 GP019757 (61)
3 GP044662 (61)
4 GP074238 (61)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 61
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
3 3
3 3
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
2 2
1 1
1 1
2 3
1 1
1 1
1 1
1 1
1 2
1 1
3 3
1 2
1 1
2 3
1 1
2 2
2 4
1 1
2 2
3 3
1 1
1 1
4 6
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
NUDIX hydrolase domain
IPR000086
NUDIX hydrolase domain Domain 87 (53) No
NUDIX hydrolase domain-like
IPR015797
NUDIX hydrolase domain-like Domain 87 (53) No
NUDIX hydrolase, conserved site
IPR020084
NUDIX hydrolase, conserved site Conserved_site 69 (42) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000086 IPR015797 IPR020084
mRNA decapping protein 2, Box A
IPR007722



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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
61 53 (87%) 45 (74%) [65; 322; 477] ~291 768 287