Family GP004266


Family ID GP004266  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group
GP004266 (61)
2 GP021484 (61)
3 GP046573 (58) , GP128383 (3)
4 GP076303 (58) , GP144637 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 61
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
3 3
1 1
2 2
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
3 3
2 2
1 1
1 1
1 1
1 1
1 3
1 1
2 8
1 1
3 3
1 2
3 3
5 5
2 2
2 2
3 4
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal RNA-processing protein 7
IPR024326
Ribosomal RNA-processing protein 7 Family 93 (57) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR024326


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Species
Information to display
?


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
61 51 (84%) 48 (79%) [73; 297; 450] ~287 833 182


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
61 48 (79%) 0.782699 0.602026 0.430243



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Species



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