Family GP000729


Family ID GP000729  add to my list RDF
Family name Aspartate aminotransferase family   suggest a name
Synonym(s) Transaminase
Cross-reference(s) PMID:
The aspartate aminotransferase gene family of Arabidopsis encodes isoenzymes localized to three distinct subcellular compartments.
7894512 PMID:
Isolation, characterisation and expression of a cDNA clone encoding plastid aspartate aminotransferase from Arabidopsis thaliana.
7766905
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Aspartate aminotransferase family (plant-specificity: 9%)
GP000729 (615)
2 GP016007 (266) , GP108937 (170) , GP017855 (98) , GP019264 (76) , GP117538 (3)
3 GP040638 (266) , GP118765 (170) , GP042539 (98) , GP044105 (76) , GP130738 (3)
4 GP070082 (266) , GP070996 (170) , GP071997 (98) , GP073634 (75) , GP147860 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 615
Species Count (w/o splice) Count (w/ splice)
4 4
6 6
44 44
18 23
10 10
36 36
10 10
14 14
14 14
14 14
10 10
12 16
9 14
9 9
10 10
17 31
13 16
9 9
13 13
15 15
12 12
11 20
9 9
20 20
17 34
10 10
16 30
12 12
16 16
12 17
26 26
18 18
14 14
10 10
8 8
22 29
12 12


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal protein L7A/L8
IPR001921
Ribosomal protein L7A/L8 Family 23 (144) Yes
H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote
IPR002415
H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote Family 23 (144) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
615 532 (87%) 437 (71%) [37; 259; 1067] ~274 2554 57