Family GP003099


Family ID GP003099  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group (plant-specificity: 19%)
GP003099 (60)
2
(plant-specificity: 19%)
GP019359 (60)
3
(plant-specificity: 19%)
GP045137 (60)
4 GP074769 (55) , GP084106 (5)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 60
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
1 1
2 2
1 1
1 1
1 1
1 1
1 5
1 1
1 1
1 1
1 6
1 2
1 1
1 1
1 1
3 3
1 1
1 1
1 1
1 2
1 1
2 6
2 2
3 3
1 2
3 3
1 1
1 1
1 1
1 1
2 2
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
ASCH domain
IPR007374
ASCH domain Domain 67 (40) No
PUA-like domain
IPR015947
PUA-like domain Domain 70 (42) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR015947 IPR007374


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Species
Information to display
?


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
60 44 (73%) 40 (67%) [51; 317; 577] ~301 1137 222


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
60 40 (67%) 2.01629 1.91202 0.257173



for (default: all):
Species



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