Family GP000386


Family ID GP000386  add to my list RDF
Family name Plant ascorbate peroxidase family   suggest a name
Synonym(s) APX
Cross-reference(s) PMID:
Analysis of the molecular evolutionary history of the ascorbate peroxidase gene family: inferences from the rice genome.
15599508 PMID:
Cytosolic ascorbate peroxidase from Arabidopsis thaliana L. is encoded by a small multigene family.
8580771 PMID:
Heat stress- and heat shock transcription factor-dependent expression and activity of ascorbate peroxidase in Arabidopsis.
12068123 PMID:
Induction of ASCORBATE PEROXIDASE 2 expression in wounded Arabidopsis leaves does not involve known wound-signalling pathways but is associated with changes in photosynthesis.
15086807 PMID:
Control of Ascorbate Peroxidase 2 expression by hydrogen peroxide and leaf water status during excess light stress reveals a functional organisation of Arabidopsis leaves.
12609042 PMID:
The Arabidopsis ascorbate peroxidase 3 is a peroxisomal membrane-bound antioxidant enzyme and is dispensable for Arabidopsis growth and development.
16873450 PMID:
Expression of the Apx gene family during leaf senescence of Arabidopsis thaliana.
16034597 PMID:
Rice ascorbate peroxidase gene family encodes functionally diverse isoforms localized in different subcellular compartments.
16397796
Comment
Family Ontology
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molecular_function
peroxidase activity
GO:0004601 (50%) - peroxidase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Plant ascorbate peroxidase family
GP000386 (612)
2
L-ascorbate peroxidase family
GP015371 (542) , GP019704 (68)
3 GP040295 (542) , GP044610 (65) , GP128309 (3)
4 GP069749 (421) ,
Chloroplastic ascorbate peroxidase subfamily
GP071125 (119) , GP074400 (65) , GP144539 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 612
Species Count (w/o splice) Count (w/ splice)
2 2
5 5
37 37
9 19
8 8
17 17
5 5
16 16
10 10
14 14
10 10
11 21
9 14
10 10
10 10
18 41
9 10
8 8
9 9
10 10
8 8
8 19
8 8
41 41
13 64
8 8
11 39
10 10
23 23
7 13
26 26
6 6
11 14
7 7
7 10
21 32
8 8


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Catalase-peroxidase haem
IPR000763
Catalase-peroxidase haem Family 1 (2) Yes
Fungal ligninase
IPR001621
Fungal ligninase Family 1 (3) Yes
Plant ascorbate peroxidase
IPR002207
Plant ascorbate peroxidase Family 85 (519) No
Haem peroxidase
IPR010255
Haem peroxidase Family 91 (559) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Haem peroxidase, plant/fungal/bacterial
IPR002016
Haem peroxidase, plant/fungal/bacterial Domain 89 (542) No
Peroxidases heam-ligand binding site
IPR019793
Peroxidases heam-ligand binding site Binding_site 69 (422) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR019793 IPR010255 IPR002016 IPR002207


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
612 450 (74%) 394 (64%) [35; 263; 829] ~274 2540 187




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