Family GP004089


Family ID GP004089  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Curation status ?
Found in Viridiplantae plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group (plant-specificity: 100%)
GP004089 (59)
2
(plant-specificity: 100%)
GP021134 (56) , GP115821 (3)
3
(plant-specificity: 100%)
GP046190 (56) , GP128257 (3)
4
(plant-specificity: 100%)
GP075873 (56) , GP144462 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 59
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
1 1
1 1
2 2
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
5 5
1 2
1 1
1 11
1 1
1 1
1 2
1 1
1 1
1 2
1 1
1 1
3 5
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



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Species
Information to display
?


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
59 44 (75%) 40 (68%) [60; 241; 440] ~226 570 212


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
59 40 (68%) 1.01645 1.00791 0.0917123



for (default: all):
Species



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