Family GP004872


Family ID GP004872  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Curation status ?
Found in Magnoliophyta plant-specific
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group (plant-specificity: 100%)
GP004872 (58)
2
(plant-specificity: 100%)
GP029531 (28) ,
(plant-specificity: 100%)
GP024843 (13) ,
(plant-specificity: 100%)
GP111962 (10) , GP114078 (4) , GP116052 (3)
3
(plant-specificity: 100%)
GP056544 (28) ,
(plant-specificity: 100%)
GP050714 (13) ,
(plant-specificity: 100%)
GP121660 (10) , GP125734 (4) , GP128647 (3)
4
(plant-specificity: 100%)
GP085804 (15) ,
(plant-specificity: 100%)
GP081287 (13) ,
(plant-specificity: 100%)
GP134179 (13) ,
(plant-specificity: 100%)
GP134965 (10) , GP140858 (4) , GP145072 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 58
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
1 1
1 4
1 1
1 1
1 1
2 2
2 2
2 2
1 1
2 2
1 4
2 2
2 2
4 10
1 1
1 6
1 1
3 3
1 1
3 3
1 1
3 4
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
58 40 (69%) 17 (29%) [69; 525; 937] ~481 1251 107