Family GP004541


Family ID GP004541  add to my list RDF
Family name Calmodulin binding protein group   suggest a name
Curation status ?
Found in Tracheophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Calmodulin binding protein group
GP004541 (60)
2 GP021962 (60)
3 GP047113 (60)
4 GP076938 (60)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 60
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
1 1
1 1
3 3
1 1
1 1
1 1
1 1
3 3
1 1
1 1
1 1
1 1
1 1
2 3
1 1
2 2
3 12
1 1
2 2
1 1
2 2
1 1
3 3
1 1
1 1
1 1
2 2
3 4
4 4


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
RNA ligase/cyclic nucleotide phosphodiesterase
IPR009097
RNA ligase/cyclic nucleotide phosphodiesterase Domain 85 (51) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR009097


Build your own display:   ?

Species
Information to display
?


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
60 49 (82%) 48 (80%) [52; 185; 319] ~199 541 178


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
60 48 (80%) 0.592438 0.504325 0.29405



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Species



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