Family GP003584


Family ID GP003584  add to my list RDF
Family name Folate-sensitive fragile site protein Fra10Ac1 homologs family   suggest a name
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Folate-sensitive fragile site protein Fra10Ac1 homologs family
GP003584 (60)
2 GP020261 (60)
3 GP045235 (60)
4 GP074856 (52) ,
(plant-specificity: 12%)
GP136108 (8)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 60
Species Count (w/o splice) Count (w/ splice)
1 1
8 8
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
2 2
1 1
1 5
1 1
2 2
1 1
1 1
1 1
1 2
1 1
2 2
1 1
1 1
2 5
1 1
1 1
1 5
2 2
2 2
1 1
1 1
2 3
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Folate-sensitive fragile site protein Fra10Ac1
IPR019129
Folate-sensitive fragile site protein Fra10Ac1 Family 78 (47) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR019129


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
60 47 (78%) 38 (63%) [60; 230; 351] ~206 635 212