Family GP003595


Family ID GP003595  add to my list RDF
Family name NEF1 - NO EXINE FORMATION 1 homolog group   suggest a name
Comment Required for normal pollen development and lipid accumulation within the tapetum
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
NEF1 - NO EXINE FORMATION 1 homolog group (plant-specificity: 50%)
GP003595 (60)
2
(plant-specificity: 50%)
GP020292 (60)
3
(plant-specificity: 50%)
GP045271 (60)
4 GP074888 (60)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 60
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
4 4
1 1
7 7
1 1
1 1
2 2
3 3
4 4
1 1
1 1
1 1
1 1
1 3
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
2 3
2 2
1 1
1 1
3 3
2 2
1 1
1 1
1 1
2 2
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
60 57 (95%) 37 (62%) [42; 1057; 1200] ~789 1571 1029