Family GP003940


Family ID GP003940  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group (plant-specificity: 11%)
GP003940 (59)
2
(plant-specificity: 22%)
GP020892 (57)
3
(plant-specificity: 22%)
GP045929 (57)
4
(plant-specificity: 22%)
GP075572 (57)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 59
Species Count (w/o splice) Count (w/ splice)
2 2
1 1
2 2
2 2
1 1
2 2
2 2
1 1
2 2
1 1
1 2
1 1
1 1
1 3
1 1
1 1
1 1
1 1
1 3
2 2
4 4
1 4
1 1
1 1
1 1
2 2
1 1
1 1
2 2
2 2
1 1
1 1
2 5
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
59 48 (81%) 40 (68%) [91; 293; 318] ~257 479 247