Family GP000388


Family ID GP000388  add to my list RDF
Family name Ammonium transporter subfamily   suggest a name
Comment see also GP015919
Family Ontology
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molecular_function
ammonium transmembrane transporter activity
GO:0008519 (74%) - ammonium transmembrane transporter activity
biological_process
ammonium transport
GO:0015696 (74%) - ammonium transport
ammonium transmembrane transport
GO:0072488 (53%) - ammonium transmembrane transport
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Ammonium transporter subfamily (plant-specificity: 19%)
GP000388 (601)
2
Ammonium transporter subfamily
GP015919 (286) , GP016466 (207) ,
(plant-specificity: 100%)
GP021298 (56) ,
(plant-specificity: 25%)
GP020674 (52)
3 GP040568 (286) , GP041088 (207) ,
(plant-specificity: 100%)
GP046373 (56) ,
(plant-specificity: 25%)
GP045685 (52)
4 GP070010 (286) , GP070102 (205) , GP076312 (56) ,
(plant-specificity: 25%)
GP132502 (52)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 601
Species Count (w/o splice) Count (w/ splice)
3 3
11 11
58 58
20 20
6 6
24 24
10 10
16 16
15 15
23 23
13 13
16 18
10 11
7 7
11 11
11 20
11 11
14 14
11 11
11 11
12 12
8 9
9 9
18 18
16 23
16 16
34 42
13 13
17 17
10 10
28 28
13 13
13 15
10 10
13 13
23 26
14 14


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Ammonium transporter
IPR001905
Ammonium transporter Family 50 (299) Yes
Blood group Rhesus C/E/D polypeptide
IPR002229
Blood group Rhesus C/E/D polypeptide Family 22 (132) Yes
Exosome complex component CSL4
IPR019495
Exosome complex component CSL4 Family 8 (49) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Ammonium transporter AmtB-like domain
IPR024041
Ammonium transporter AmtB-like domain Domain 74 (445) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR024041
Ammonium transporter, conserved site
IPR018047 IPR001905



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
601 566 (94%) 406 (68%) [43; 461; 1181] ~387 2674 246