Family GP004918


Family ID GP004918  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group (plant-specificity: 11%)
GP004918 (59)
2
(plant-specificity: 22%)
GP022667 (39) ,
(plant-specificity: 9%)
GP023744 (20)
3
(plant-specificity: 22%)
GP047925 (39) ,
(plant-specificity: 9%)
GP050668 (20)
4
(plant-specificity: 22%)
GP077847 (39) ,
(plant-specificity: 9%)
GP081205 (17) , GP147210 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 59
Species Count (w/o splice) Count (w/ splice)
2 2
5 5
10 10
3 3
3 3
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
3 7
1 1
2 2
1 1
2 2
1 1
1 1
1 1
1 1
1 1
2 4
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



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Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
59 53 (90%) 48 (81%) [81; 228; 742] ~248 1200 114


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
59 48 (81%) 1.80211 1.99445 0.349264



for (default: all):
Species



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