Family GP004608


Family ID GP004608  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group (plant-specificity: 9%)
GP004608 (56)
2
(plant-specificity: 19%)
GP023775 (10) ,
(plant-specificity: 44%)
GP024085 (11) , GP110951 (10) ,
(plant-specificity: 12%)
GP111789 (8) ,
(plant-specificity: 12%)
GP024990 (8) , GP116972 (3)
3
(plant-specificity: 44%)
GP049692 (11) ,
(plant-specificity: 19%)
GP050011 (10) ,
(plant-specificity: 12%)
GP122441 (8) ,
(plant-specificity: 12%)
GP050903 (8) , GP125061 (5) , GP125083 (5) , GP130041 (3)
4
(plant-specificity: 44%)
GP080010 (11) ,
(plant-specificity: 19%)
GP080393 (10) ,
(plant-specificity: 12%)
GP136462 (8) ,
(plant-specificity: 12%)
GP081509 (8) , GP140060 (5) , GP140085 (5) , GP147021 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 56
Species Count (w/o splice) Count (w/ splice)
21 21
35 35


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
56 48 (86%) 38 (68%) [109; 547; 1125] ~496 2184 227