Family GP000435


Family ID GP000435  add to my list RDF
Family name Glyceraldehyde-3-phosphate dehydrogenase family   suggest a name
Cross-reference(s) PMID:
The map-based sequence of the rice genome.
16100779
Family Ontology
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molecular_function
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0016620 (66%) - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Glyceraldehyde-3-phosphate dehydrogenase family (plant-specificity: 9%)
GP000435 (700)
2 GP015346 (694) , GP117583 (4)
3 GP040009 (694) , GP127190 (4)
4 GP069740 (476) , GP070707 (216) , GP142954 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 700
Species Count (w/o splice) Count (w/ splice)
3 3
3 3
50 50
17 35
5 5
45 45
10 10
24 24
17 17
9 9
10 10
12 24
10 12
10 10
10 10
15 30
10 22
9 9
13 13
14 14
14 14
9 13
8 8
35 35
16 33
8 8
15 45
10 10
24 24
9 17
30 30
13 13
14 18
10 10
12 14
27 40
13 13


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Glyceraldehyde/Erythrose phosphate dehydrogenase family
IPR020831
Glyceraldehyde/Erythrose phosphate dehydrogenase family Family 66 (463) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain
IPR020828
Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain Domain 70 (491) No
Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
IPR020829
Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain Domain 69 (485) No
Glyceraldehyde 3-phosphate dehydrogenase, active site
IPR020830
Glyceraldehyde 3-phosphate dehydrogenase, active site Active_site 61 (428) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR020828 IPR020829 IPR020831 IPR020830
Glyceraldehyde-3-phosphate dehydrogenase, type I
IPR006424



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
700 563 (80%) 454 (65%) [36; 343; 1316] ~370 3252 254