Family GP002152


Family ID GP002152  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Curation status ?
Found in Plant-specific plant-specific
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group (plant-specificity: 100%)
GP002152 (61)
2
(plant-specificity: 100%)
GP021918 (25) ,
(plant-specificity: 98%)
GP110024 (19) ,
(plant-specificity: 100%)
GP023526 (15)
3
(plant-specificity: 100%)
GP047046 (25) ,
(plant-specificity: 98%)
GP119913 (19) ,
(plant-specificity: 100%)
GP048964 (15)
4
(plant-specificity: 100%)
GP077273 (23) ,
(plant-specificity: 98%)
GP133421 (18) ,
(plant-specificity: 100%)
GP079105 (15)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 61
Species Count (w/o splice) Count (w/ splice)
1 1
17 17
1 1
1 1
41 41


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
61 60 (98%) 38 (62%) [110; 518; 2613] ~556 3385 227