Family GP003708


Family ID GP003708  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Curation status ?
Found in Tracheophyta plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group (plant-specificity: 100%)
GP003708 (57)
2
(plant-specificity: 100%)
GP022761 (49) ,
(plant-specificity: 100%)
GP112428 (6)
3
(plant-specificity: 100%)
GP048050 (48) , GP124319 (5)
4 GP078195 (22) ,
(plant-specificity: 100%)
GP135975 (8) ,
(plant-specificity: 100%)
GP094070 (8) ,
(plant-specificity: 100%)
GP081298 (6) , GP093495 (4) , GP143968 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 57
Species Count (w/o splice) Count (w/ splice)
1 1
4 4
1 1
1 1
1 1
2 2
2 2
1 1
3 6
3 3
1 1
1 3
2 2
1 1
1 1
1 1
1 1
1 1
1 1
2 2
2 3
1 1
2 3
1 1
2 2
2 2
2 2
1 1
1 1
1 1
3 3
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



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Species
Information to display
?


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
57 50 (88%) 47 (82%) [68; 365; 524] ~358 1034 227


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
57 47 (82%) 0.985541 0.954727 0.271468



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Species



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