Family GP000379


Family ID GP000379  add to my list RDF
Family name Carotenoid dioxygenase   suggest a name
Synonym(s) Carotenoid cleavage dioxygenase, carotenoid oxygenase
Cross-reference(s) PMID:
Molecular characterization of the Arabidopsis 9-cis epoxycarotenoid dioxygenase gene family.
12834401 PMID:
Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase, a key enzyme in abscisic acid biosynthesis in Arabidopsis.
11532178 PMID:
Genetic control of abscisic acid biosynthesis in maize.
9342392 PMID:
Structural insights into maize viviparous14, a key enzyme in the biosynthesis of the phytohormone abscisic acid.
20884803 PMID:
Functional analysis of Arabidopsis NCED6 and NCED9 genes indicates that ABA synthesized in the endosperm is involved in the induction of seed dormancy.
16412079 PMID:
Increased abscisic acid levels in transgenic tobacco over-expressing 9 cis-epoxycarotenoid dioxygenase influence H2O2 and NO production and antioxidant defences.
19183289 PMID:
Nucleotide variation in the NCED3 region of Arabidopsis thaliana and its association study with abscisic acid content under drought stress.
19200156 PMID:
Cloning and functional analysis of 9-cis-epoxycarotenoid dioxygenase (NCED) genes encoding a key enzyme during abscisic acid biosynthesis from peach and grape fruits.
19307046 PMID:
Cloning of 9-cis-epoxycarotenoid dioxygenase (NCED) gene and the role of ABA on fruit ripening.
19816120 PMID:
QTLs and candidate genes for desiccation and abscisic acid content in maize kernels.
20047666 PMID:
Fruit-specific RNAi-mediated suppression of SlNCED1 increases both lycopene and ╬▓-carotene contents in tomato fruit.
22345638 PMID:
Suppression of 9-cis-epoxycarotenoid dioxygenase, which encodes a key enzyme in abscisic acid biosynthesis, alters fruit texture in transgenic tomato.
22108525 PMID:
Epoxycarotenoid cleavage by NCED5 fine-tunes ABA accumulation and affects seed dormancy and drought tolerance with other NCED family members.
22171989
Comment includes 9-cis epoxycarotenoid dioxygenases (NCED) and other carotenoid cleavage dioxygenases (CCD). For a complete picture of the family, merge with family 3862.
Family Ontology
Close Hide
N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Carotenoid dioxygenase (plant-specificity: 9%)
GP000379 (591)
2 GP015570 (470) ,
(plant-specificity: 25%)
GP019999 (67) , GP020547 (53)
3
Carotenoid double bound cleavage dioxygenase
GP040241 (357) , GP041864 (111) ,
Carotenoid cleavage dioxygenase, AtCCD8 type
GP044951 (67) , GP046645 (45) , GP122182 (8)
4
9-cis-epoxycarotenoid dioxygenase
GP069973 (357) , GP071338 (111) , GP074574 (67) , GP076393 (45) , GP136111 (8)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 591
Species Count (w/o splice) Count (w/ splice)
1 1
8 8
27 27
9 12
21 21
21 21
17 17
14 14
14 14
15 15
11 11
16 18
15 17
8 8
12 12
16 20
14 15
9 9
12 12
12 12
14 14
9 9
9 10
18 18
15 18
18 18
34 48
11 11
19 19
9 11
47 47
17 17
16 17
7 7
9 10
18 24
9 9


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Carotenoid oxygenase
IPR004294
Carotenoid oxygenase Family 91 (536) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR004294


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
591 550 (93%) 431 (73%) [37; 546; 1054] ~473 3427 274