Family GP004084


Family ID GP004084  add to my list RDF
Family name Carbohydrate/purine kinase domain containing group   suggest a name
Comment
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Carbohydrate/purine kinase domain containing group (plant-specificity: 9%)
GP004084 (58)
2
(plant-specificity: 9%)
GP021127 (58)
3
(plant-specificity: 9%)
GP046183 (58)
4
(plant-specificity: 9%)
GP075866 (58)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 58
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
2 3
1 1
1 1
1 1
1 1
1 1
2 2
1 3
1 1
1 1
1 1
1 2
1 1
1 1
1 1
1 1
1 1
1 1
1 1
6 6
3 5
1 1
2 4
1 1
1 1
1 1
2 2
2 2
1 1
1 1
1 2
1 2
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Carbohydrate/puine kinase, PfkB, conserved site
IPR002173
Carbohydrate/puine kinase, PfkB, conserved site Conserved_site 64 (37) No
Carbohydrate kinase PfkB
IPR011611
Carbohydrate kinase PfkB Domain 84 (49) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002173 IPR011611


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
58 48 (83%) 37 (64%) [71; 403; 1157] ~372 1793 312