Family GP004324


Family ID GP004324  add to my list RDF
Family name WW domain-containing protein group   suggest a name
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
WW domain-containing protein group (plant-specificity: 44%)
GP004324 (57)
2
(plant-specificity: 44%)
GP021572 (54) , GP116122 (3)
3
(plant-specificity: 44%)
GP046665 (52) , GP128762 (3)
4 GP076417 (52) , GP145245 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 57
Species Count (w/o splice) Count (w/ splice)
3 3
3 3
1 1
2 2
2 2
1 1
3 3
1 1
1 1
2 2
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 2
1 1
1 1
1 4
1 1
2 2
1 1
2 2
1 1
2 2
2 2
4 4
2 2
1 1
1 1
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
WW domain
IPR001202
WW domain Domain 77 (44) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001202


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
57 53 (93%) 33 (58%) [60; 390; 977] ~354 1514 312