Family GP005357


Family ID GP005357  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Curation status ?
Found in Magnoliophyta plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group (plant-specificity: 100%)
GP005357 (58)
2
(plant-specificity: 100%)
GP023718 (58)
3
(plant-specificity: 100%)
GP049224 (39) ,
(plant-specificity: 100%)
GP050760 (11) , GP128133 (4) , GP057194 (4)
4
(plant-specificity: 100%)
GP079447 (31) ,
(plant-specificity: 100%)
GP081368 (11) ,
(plant-specificity: 100%)
GP087767 (6) , GP141036 (4) , GP089690 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 58
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
1 1
2 3
3 5
3 3
3 3
8 10
2 2
1 1
1 1
1 1
1 1
2 2
1 1
2 2
1 1
1 3
1 1
1 2
1 1
1 1
1 1
1 1
4 6
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



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Species
Information to display
?


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
58 48 (83%) 48 (83%) [50; 92; 130] ~88 184 56


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
58 48 (83%) 0.792105 0.70504 0.22856



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