Family GP003762


Family ID GP003762  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Curation status ?
Found in Tracheophyta plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group (plant-specificity: 100%)
GP003762 (58)
2
(plant-specificity: 100%)
GP022308 (40) ,
(plant-specificity: 100%)
GP024467 (18)
3
(plant-specificity: 100%)
GP047690 (40) ,
(plant-specificity: 100%)
GP121022 (11) ,
(plant-specificity: 100%)
GP049844 (7)
4
(plant-specificity: 100%)
GP077574 (40) ,
(plant-specificity: 100%)
GP134646 (11) ,
(plant-specificity: 100%)
GP081848 (7)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 58
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
1 1
3 3
3 3
3 3
2 2
1 1
1 1
1 1
1 1
1 2
1 1
1 1
1 1
1 1
1 1
3 3
1 1
1 1
2 2
1 1
2 2
1 1
2 2
2 2
2 2
2 2
2 2
2 2
2 2
4 4
2 2


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Domain of unknown function DUF4378
IPR025486
Domain of unknown function DUF4378 Domain 84 (49) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR025486


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Species
Information to display
?


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
58 57 (98%) 55 (95%) [84; 679; 936] ~642 1406 383


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
58 55 (95%) 1.11921 1.10714 0.226349



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