Family GP003670


Family ID GP003670  add to my list RDF
Family name Endonuclease/exonuclease/phosphatase domain containing group   suggest a name
Comment
Curation status ?
Found in Spermatophyta
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Endonuclease/exonuclease/phosphatase domain containing group
GP003670 (57)
2 GP020448 (57)
3 GP045446 (57)
4 GP075076 (57)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 57
Species Count (w/o splice) Count (w/ splice)
3 3
1 1
2 2
1 1
1 2
1 2
1 1
2 2
3 6
1 1
2 2
1 1
2 2
2 2
1 2
2 2
1 1
1 2
1 1
2 3
1 1
2 2
1 1
2 2
3 3
1 1
1 1
3 3
4 4


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Endonuclease/exonuclease/phosphatase
IPR005135
Endonuclease/exonuclease/phosphatase Domain 88 (50) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR005135


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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
57 49 (86%) 34 (60%) [52; 196; 321] ~208 414 289