Family GP003275


Family ID GP003275  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Synonym(s) TPLATE homologs
Family Ontology
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molecular_function
binding
GO:0005488 (54%) - binding
protein binding
GO:0005515 (2%) - protein binding
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group (plant-specificity: 94%)
GP003275 (56)
2
(plant-specificity: 94%)
GP019666 (56)
3 GP044938 (56)
4 GP074558 (56)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 56
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
1 1
5 5
1 1
2 2
2 2
1 1
2 2
2 2
1 1
1 1
1 1
3 6
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
2 2
1 1
5 5
2 2
1 1
1 1
1 1
2 2
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Armadillo-type fold
IPR016024
Armadillo-type fold Domain 54 (30) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR016024


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
56 53 (95%) 39 (70%) [92; 1147; 1636] ~901 2666 1128