Family GP003874


Family ID GP003874  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Family Ontology
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molecular_function
binding
GO:0005488 (2%) - binding
Curation status ?
Found in Tracheophyta plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group (plant-specificity: 100%)
GP003874 (57)
2
(plant-specificity: 100%)
GP020777 (54) , GP116058 (3)
3
(plant-specificity: 100%)
GP045801 (54) , GP128659 (3)
4
(plant-specificity: 100%)
GP075445 (54) , GP145091 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 57
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
1 1
1 1
1 1
1 1
1 1
3 4
2 2
2 2
2 2
2 5
2 2
3 3
4 4
2 2
1 1
1 1
2 2
1 1
1 2
2 2
2 4
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
2 2
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Clusterin-like
IPR000753
Clusterin-like Family 2 (1) Yes
Cor1/Xlr/Xmr family
IPR006888
Cor1/Xlr/Xmr family Family 2 (1) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



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Species
Information to display
?


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
57 50 (88%) 49 (86%) [66; 213; 645] ~225 1173 185


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
57 49 (86%) 0.806887 0.555326 0.452928



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Species



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